Chuiqin/irgsea
WebOct 27, 2024 · The prognosis of human papillomavirus (HPV)-infected head and neck squamous cell carcinoma (HNSCC) is often better than that of HPV ⁻ cancer, which is possibly caused by the differences in their ... WebA list after perform irGSEA.integrate. method: A character. It should be one of the followling : AUCell, UCell, singscore, ssgsea or RRA. Default RRA. upset.width: Width of the whole upset plot. Default 13. upset.height: ... Developed by Chuiqin Fan. Site built with ...
Chuiqin/irgsea
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WebGitHub - chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis chuiqin / irGSEA Fork master 1 branch 1 tag chuiqin fix the bug of plot … WebirGSEA.score.Rd Input a Seurat object or scRNA-seq matrix, calculate the enrichment scores of AUCell, UCell, singscore and ssgsea. Then, return a Seurat object including …
WebIn chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis View source: R/main.R irGSEA.score R Documentation Calculate enrichment scores … WebSep 1, 2024 · Microglia-specific transcriptional repression of DNA repeats after chronic stress. (A) Genome distribution of down-regulated genes (down_genes, red vertical bars) and DNA repeats (blue vertical bars).
WebReleases · chuiqin/irGSEA. irGSEA 1.1.3. 08 Apr 08:15 . chuiqin. V1 c42f07f. Compare. Choose a tag to compare. Could not load tags. Nothing to show {{ refName }} default. … WebReleases · chuiqin/irGSEA. irGSEA 1.1.3. 08 Apr 08:15 . chuiqin. V1 c42f07f. Compare. Choose a tag to compare. Could not load tags. Nothing to show {{ refName }} default. View all tags. irGSEA 1.1.3 Latest. Latest. This version of irGSEA only supports AUCell, UCell, singscore and ssgsea. Assets 3. All reactions.
WebNov 1, 2024 · Alternatively, cell-type enrichment analysis using the AUCell algorithm in irGSEA revealed the same results (Fig. 4 E–F). We also did cell deconvolution analysis to estimate the proportions of distinct microglia subpopulations in our bulk microglia RNA-seq in CO and ST groups and found a significant increase of “Homeostatic microglia” and ...
WebThe integration of single cell rank-based gene set enrichment analysis • irGSEA irGSEA Integrate all single cell rank-based gene set enrichment analysis and easy to visualize … paramount adult school phlebotomyWebJul 26, 2024 · chuiqin/irGSEA irGSEA.integrate: Integrate differential gene set calculated by all enrichment... irGSEA.integrate: Integrate differential gene set calculated by all … paramount adult high schoolWebJan 31, 2024 · Single cell RNA sequencing (scRNA-seq) provides a better understanding of cellular behavior in the context of complex tumor microenvironments by analyzing individual cell populations. Methods The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) data was employed to investigate the metabolic pathways in HCC. paramount adult school classesWebAug 1, 2024 · chuiqin/irGSEA/) in R software was used. This package was. used to score individual cells using multiple gene set enrichment. methods and generate a multiple gene set enrichment score. matrix. paramount adult school programsWebJul 26, 2024 · chuiqin/irGSEA / irGSEA.halfvlnplot: Half vlnplot irGSEA.halfvlnplot: Half vlnplot In chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis View source: R/plot.R irGSEA.halfvlnplot R Documentation Half vlnplot Description Easy to show the data distribution by half vlnplot Usage paramount advantage log inWebStress-induced neuroinflammation is considered an important mechanism in the pathogenesis of depression. As immune effector cells in the brain, microglia play an essential role in ... paramount advantage customer serviceWebA list after perform irGSEA.integrate. method: A character. It should be one of the followling : AUCell, UCell, singscore, ssgsea or RRA. Default RRA. top: The top gene sets. Default 50. show.geneset: A vector including special gene sets. Default NULL. ... paramount advantage medicaid dentists